jLM.CMEPostProcessing
=====================

.. automodule:: jLM.CMEPostProcessing

   
   .. rubric:: Functions

   .. autosummary::
   
      autocurve
      closeLMFile
      color_name_to_rgb
      color_name_to_rgba
      community_to_membership
      compare_communities
      convex_hull
      disjoint_union
      getAvgVarTrace
      getHistogram
      getNumTrajectories
      getOccupancyKymograph
      getPhaseSpace
      getSpecieTrace
      getSpecies
      getTimesteps
      getTrajectory
      get_include
      hsl_to_rgb
      hsla_to_rgba
      hsv_to_rgb
      hsva_to_rgba
      intersection
      is_bigraphical
      is_degree_sequence
      is_graphical
      is_graphical_degree_sequence
      load
      mean
      median
      openLMFile
      percentile
      plot
      plotAvgVar
      plotAvgVarFromFile
      plotCMEReactionNetwork
      plotOccupancyKymograph
      plotPhaseSpace
      plotTrace
      plotTraceFromFile
      power_law_fit
      quantile
      read
      rescale
      rgb_to_hsl
      rgb_to_hsv
      rgba_to_hsla
      rgba_to_hsva
      save
      setLMLogConsole
      setLMLogFile
      setLMLoggerLevel
      set_progress_handler
      set_random_number_generator
      set_status_handler
      showAvgVar
      showAvgVarFromFile
      showOccupancyKymograph
      showTrace
      showTraceFromFile
      split_join_distance
      summary
      umap_compute_weights
      union
      write
   
   .. rubric:: Classes

   .. autosummary::
   
      ARPACKOptions
      AdvancedGradientPalette
      BFSIter
      BoundingBox
      CairoGraphDrawer
      ClusterColoringPalette
      Clustering
      CohesiveBlocks
      Configuration
      Cover
      Cut
      DFSIter
      DefaultGraphDrawer
      Dendrogram
      DyadCensus
      Edge
      EdgeSeq
      FittedPowerLaw
      Flow
      GradientPalette
      Graph
      GraphBase
      GraphSummary
      Histogram
      Layout
      Matching
      MatplotlibGraphDrawer
      Matrix
      Palette
      Plot
      Point
      PrecalculatedPalette
      RainbowPalette
      Rectangle
      RunningMean
      TriadCensus
      UniqueIdGenerator
      Vertex
      VertexClustering
      VertexCover
      VertexDendrogram
      VertexSeq
   
   .. rubric:: Exceptions

   .. autosummary::
   
      InternalError