In [1]:
# jLM CME Imports
from jLM.CME import CMESimulation
from jLM.units import *
from jLM.LMLogger import *
from jLM.CMEPostProcessing import *
In [2]:
# Custom Post-processing Imports
import matplotlib.pyplot as plt
import numpy as np
import os
import scipy
import scipy.optimize
import logging
In [3]:
outputFile = "rnaprotein.lm"
In [4]:
# Set up logging for jLM CME
setLMLoggerLevel(logging.INFO)
In [5]:
# Create our CME simulation object
sim = CMESimulation()
In [6]:
# Define our chemical species
species = ['DNA', 'RNA', 'Protein']
sim.defineSpecies(species)
In [7]:
# Add reactions to the simulation
sim.addReaction(reactant = 'DNA', product = ('DNA', 'RNA'), rate = 1.0 / 120.0)
sim.addReaction(reactant = 'RNA', product = ('RNA', 'Protein'), rate = 1.0 / 60.0)
sim.addReaction(reactant = 'RNA', product = '', rate = 1.0 / 120.0)
sim.addReaction(reactant = 'Protein', product = '', rate = 1.0 / 15.0 * 60.0)
In [8]:
# Set our initial species counts
sim.addParticles(species = 'DNA', count = 1)
sim.addParticles(species = 'RNA', count = 2)
sim.addParticles(species = 'Protein', count = 20)
In [9]:
sim.setWriteInterval(1.0)
sim.setSimulationTime(36000.0)
os.system("rm -rf %s"%(outputFile))
sim.save(outputFile)
In [10]:
# Run some replicates using the Gillespie solver
numberReplicates = 100
sim.run(filename = outputFile, method = "lm::cme::GillespieDSolver", replicates = numberReplicates)
0%| | 0/100 [00:00<?, ?it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 1 and bottom word 255848122 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed.
1%|1 | 1/100 [00:00<00:29, 3.40it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 2 and bottom word 327460930 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed. 2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 3 and bottom word 384864740 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed.
3%|3 | 3/100 [00:00<00:11, 8.41it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 4 and bottom word 442099041 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed. 2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 5 and bottom word 499485511 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed.
5%|5 | 5/100 [00:00<00:08, 11.45it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 6 and bottom word 557373599 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed. 2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 7 and bottom word 614644530 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed.
7%|7 | 7/100 [00:00<00:06, 13.40it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 8 and bottom word 672384529 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed. 2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 9 and bottom word 730719377 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed.
9%|9 | 9/100 [00:00<00:06, 14.59it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 10 and bottom word 789452154 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed. 2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 11 and bottom word 847061784 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed.
11%|#1 | 11/100 [00:00<00:05, 15.43it/s]
2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 12 and bottom word 905208372 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:48) Info: Simulation file closed. 2025-09-02 15:58:48) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:48) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:48) Info: Data output thread running. 2025-09-02 15:58:48) Info: Seeding xorwow rng with top word 13 and bottom word 962289813 2025-09-02 15:58:48) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
13%|#3 | 13/100 [00:00<00:05, 16.03it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 14 and bottom word 19889082 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 15 and bottom word 77173143 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
15%|#5 | 15/100 [00:01<00:05, 16.45it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 16 and bottom word 134594022 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 17 and bottom word 192060122 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
17%|#7 | 17/100 [00:01<00:04, 16.75it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 18 and bottom word 249226082 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 19 and bottom word 308288739 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
19%|#9 | 19/100 [00:01<00:04, 16.71it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 20 and bottom word 370081848 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 21 and bottom word 427993347 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
21%|##1 | 21/100 [00:01<00:04, 16.87it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 22 and bottom word 486019745 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 23 and bottom word 543852644 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
23%|##3 | 23/100 [00:01<00:04, 17.00it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 24 and bottom word 601658283 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 25 and bottom word 658755524 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
25%|##5 | 25/100 [00:01<00:04, 17.12it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 26 and bottom word 716535423 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 27 and bottom word 774966500 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
27%|##7 | 27/100 [00:01<00:04, 17.16it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 28 and bottom word 832339710 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 29 and bottom word 889018272 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed.
29%|##9 | 29/100 [00:01<00:04, 17.29it/s]
2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:49) Info: Data output thread running. 2025-09-02 15:58:49) Info: Seeding xorwow rng with top word 30 and bottom word 945912763 2025-09-02 15:58:49) Info: Data output thread finished. 2025-09-02 15:58:49) Info: Simulation file closed. 2025-09-02 15:58:49) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:49) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 31 and bottom word 2094025 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
31%|###1 | 31/100 [00:02<00:03, 17.39it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 32 and bottom word 59548715 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 33 and bottom word 116858855 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
33%|###3 | 33/100 [00:02<00:03, 17.42it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 34 and bottom word 173623866 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 35 and bottom word 229766168 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
35%|###5 | 35/100 [00:02<00:03, 17.52it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 36 and bottom word 286183080 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 37 and bottom word 342511292 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
37%|###7 | 37/100 [00:02<00:03, 17.57it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 38 and bottom word 399343373 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 39 and bottom word 455418256 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
39%|###9 | 39/100 [00:02<00:03, 17.60it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 40 and bottom word 512623006 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 41 and bottom word 569080628 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
41%|####1 | 41/100 [00:02<00:03, 17.61it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 42 and bottom word 626044888 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 43 and bottom word 682868049 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
43%|####3 | 43/100 [00:02<00:03, 17.61it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 44 and bottom word 739618871 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 45 and bottom word 795769063 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
45%|####5 | 45/100 [00:02<00:03, 17.54it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 46 and bottom word 854606759 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed. 2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 47 and bottom word 910936531 2025-09-02 15:58:50) Info: Data output thread finished. 2025-09-02 15:58:50) Info: Simulation file closed.
47%|####6 | 47/100 [00:02<00:03, 17.58it/s]
2025-09-02 15:58:50) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:50) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:50) Info: Data output thread running. 2025-09-02 15:58:50) Info: Seeding xorwow rng with top word 48 and bottom word 967662582 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 49 and bottom word 24067765 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
49%|####9 | 49/100 [00:03<00:02, 17.57it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 50 and bottom word 81741453 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 51 and bottom word 138515794 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
51%|#####1 | 51/100 [00:03<00:02, 17.56it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 52 and bottom word 195826234 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 53 and bottom word 253074364 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
53%|#####3 | 53/100 [00:03<00:02, 17.51it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 54 and bottom word 310728522 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 55 and bottom word 367456313 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
55%|#####5 | 55/100 [00:03<00:02, 17.52it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 56 and bottom word 424876283 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 57 and bottom word 481924743 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
57%|#####6 | 57/100 [00:03<00:02, 17.51it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 58 and bottom word 539161483 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 59 and bottom word 595628815 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
59%|#####8 | 59/100 [00:03<00:02, 17.45it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 60 and bottom word 654647020 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 61 and bottom word 710892582 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
61%|######1 | 61/100 [00:03<00:02, 17.51it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 62 and bottom word 767854553 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 63 and bottom word 824134625 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
63%|######3 | 63/100 [00:03<00:02, 17.56it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 64 and bottom word 881228245 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed. 2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:51) Info: Seeding xorwow rng with top word 65 and bottom word 937807826 2025-09-02 15:58:51) Info: Data output thread finished. 2025-09-02 15:58:51) Info: Simulation file closed.
65%|######5 | 65/100 [00:03<00:01, 17.57it/s]
2025-09-02 15:58:51) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:51) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:51) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 66 and bottom word 994781097 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 67 and bottom word 51078098 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
67%|######7 | 67/100 [00:04<00:01, 17.49it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 68 and bottom word 110230413 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 69 and bottom word 166901854 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
69%|######9 | 69/100 [00:04<00:01, 17.50it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 70 and bottom word 224446623 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 71 and bottom word 281228444 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
71%|#######1 | 71/100 [00:04<00:01, 17.51it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 72 and bottom word 338588683 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 73 and bottom word 395311664 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
73%|#######3 | 73/100 [00:04<00:01, 17.53it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 74 and bottom word 452310354 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 75 and bottom word 508903415 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
75%|#######5 | 75/100 [00:04<00:01, 17.57it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 76 and bottom word 565863546 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 77 and bottom word 622556976 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
77%|#######7 | 77/100 [00:04<00:01, 17.56it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 78 and bottom word 680012686 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 79 and bottom word 736702666 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
79%|#######9 | 79/100 [00:04<00:01, 17.56it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 80 and bottom word 793228048 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 81 and bottom word 851540965 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed.
81%|########1 | 81/100 [00:04<00:01, 17.48it/s]
2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 82 and bottom word 909116354 2025-09-02 15:58:52) Info: Data output thread finished. 2025-09-02 15:58:52) Info: Simulation file closed. 2025-09-02 15:58:52) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:52) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:52) Info: Data output thread running. 2025-09-02 15:58:52) Info: Seeding xorwow rng with top word 83 and bottom word 965883874 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
83%|########2 | 83/100 [00:04<00:00, 17.51it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 84 and bottom word 23770773 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 85 and bottom word 80606103 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
85%|########5 | 85/100 [00:05<00:00, 17.50it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 86 and bottom word 137457043 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 87 and bottom word 194080194 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
87%|########7 | 87/100 [00:05<00:00, 17.53it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 88 and bottom word 250940074 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 89 and bottom word 307522745 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
89%|########9 | 89/100 [00:05<00:00, 17.53it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 90 and bottom word 365037454 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 91 and bottom word 421677525 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
91%|#########1| 91/100 [00:05<00:00, 17.54it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 92 and bottom word 478970184 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 93 and bottom word 535857444 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
93%|#########3| 93/100 [00:05<00:00, 17.52it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 94 and bottom word 593483373 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 95 and bottom word 650129753 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
95%|#########5| 95/100 [00:05<00:00, 17.53it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 96 and bottom word 707255773 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 97 and bottom word 764398013 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
97%|#########7| 97/100 [00:05<00:00, 17.53it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 98 and bottom word 821439473 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed. 2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 99 and bottom word 879226921 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
99%|#########9| 99/100 [00:05<00:00, 17.49it/s]
2025-09-02 15:58:53) Info: Using 32 processor(s) and 1 CUDA device(s) per process. 2025-09-02 15:58:53) Info: Assigning 1.00 processor(s) and 1.00 CUDA device(s) per replicate. 2025-09-02 15:58:53) Info: Data output thread running. 2025-09-02 15:58:53) Info: Seeding xorwow rng with top word 100 and bottom word 936511610 2025-09-02 15:58:53) Info: Data output thread finished. 2025-09-02 15:58:53) Info: Simulation file closed.
100%|##########| 100/100 [00:05<00:00, 16.78it/s]
In [11]:
showAvgVarFromFile(outputFile, ['DNA', 'RNA', 'Protein'])
In [12]:
plotAvgVarFromFile(outputFile, ['DNA', 'RNA', 'Protein'], 'RNAProteinAvgVar.png')
<Figure size 640x480 with 0 Axes>